Rstudio IDE
29 results found
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Error installing packages: UsingR
install.packages('UsingR')
Installing package into ‘/resources/common/R/Library’
(as ‘lib’ is unspecified)
also installing the dependency ‘Hmisc’
...
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Hmisc.so Hmisc.o cidxcn.o cidxcp.o hoeffd.o init.o jacklins.o largrec.o mChoice.o maxempr.o nstr.o ranksort.o rcorr.o string_box.o wclosest.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
/usr/bin/ld: cannot find -lgfortran
collect2: error: ld returned 1 exit status
make: *** [/usr/share/R/share/make/shlib.mk:6: Hmisc.so] Error 1I noticed that /usr/lib/libgfortran.so is a broken symbolic link.
rstudio@bc8a66fb9e33:/resources/rstudio$ ls -l /usr/lib/libgfortran.so
lrwxrwxrwx 1 root root 42 Aug 2 21:38 /usr/lib/libgfortran.so -> /usr/lib/x86_64-linux-gnu/libgfortran.so.3
rstudio@bc8a66fb9e33:/resources/rstudio$ ls -lH /usr/lib/libgfortran.so
ls: cannot access '/usr/lib/libgfortran.so': No such file or directoryrstudio@bc8a66fb9e33:/resources/rstudio$ ls -l /usr/lib/x8664-linux-gnu/libgfortran.so.*…
2 votes -
rJava package issue
Recently i am unable to use the RWeka package in RStudio. It is because its related package rJava is not installing properly. This has happened quite recently. I investigated a bit and doubt if it has to do with mismatch of java versions in R and the JDK. Is it possible to update the Java with latest JDK 9? If you have any other solution in place, please let me know. At the moment, i am unable to use any package that has rJava package dependency. Appreciate your help in this
2 votes -
1 vote
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2 votes
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Error installing Rstan
I am trying to install "rstan" package from within rstudio. I got the error message saying "/usr/bin/ld: cannot find -lgfortran
collect2: error: ld returned 1 exit status ..."This is probably because I do not have gfortran and its libraries installed. I know how to do this on my local Linux machine but don't know how to do it with the DSW cloud environment.
Thanks.
Best,
Shige1 vote -
Trying to use SparkR but createDataFrame(sqlContext, data) fails
I get the following error:
Error in invokeJava(isStatic = FALSE, objId$id, methodName, ...) :
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 0.0 failed 1 times, most recent failure: Lost task 0.0 in stage 0.0 (TID 0, localhost): java.lang.OutOfMemoryError: Java heap space
at java.util.Arrays.copyOf(Arrays.java:3236)
at java.io.ByteArrayOutputStream.grow(ByteArrayOutputStream.java:118)
at java.io.ByteArrayOutputStream.ensureCapacity(ByteArrayOutputStream.java:93)
at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:153)
at java.io.ObjectOutputStream$BlockDataOutputStream.drain(ObjectOutputStream.java:1877)
at java.io.ObjectOutputStream$BlockDataOutputStream.setBlockDataMode(ObjectOutputStream.java:1786)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1189)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
at org.apache.spark.serializer.JavaSerializationStream.writeObject(JavaSerializer.scala:44)
at org.apache.spark.serializer.JavaSerializerInstance.serialize(JavaSerialize2 votes -
3 votes
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1 vote
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Update R to v3.4.2
Some of the advanced packages like quanteda don't work with the older versions of R.
1 vote
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